Manual page for apps.Hist program

Hist calculates a 1D od 2D histogram from one-dimensional or two-dimensional data

Application reads a file with multiple columns. Then prepares a histogram from datafound in a specified column.

-h print a brief summary of available options
-help=<name-part> print a help message on the screen - ANSI terminal version with visual enhancements. If <name-part> argumen is given, the program will print only these options that contains that substring
-help.dox=<name> print a help message in doxygen (*.dox) format on the screen for the Hist program
-help.md=<name> print a help message in markdown (*.md) format on the screen
-help.option=<option-name> print a help message for a single option on the screen.
-help.plain=<name-part> print a help message on the screen - plain text version. If <name-part> argumen is given, the program will print only these options that contains that substring
-hist.2d=<T|F> build two dimensional histogram. Two columns of data must be provided to do this
-hist.describe_data=<T|F> prints some simple statistics for each data column
-hist.range=<min,max> define the data range to be included in a histogram.other data observations will be recorded as outliers
-hist.show=<line width> shows the histogram on standard output (usually a screen) in an asci-art like fashion. The parameter - screen’s width changes the maximum height of the histogram
-in.column.index=<number> provides a column index for input data. By default the first column is used
-in.column.indexes=<numbers> provides column indexes (counting from 1) for input data.
-in.fname=<file name> provides a name of a file with input data
-mute suppress all messages from a given package or class, e.g. “-mute=jbcl.data.formats”, or “-mute=jbcl.calc.structural.Crmsd”. It is also possible to switch of a whole branch from the jbcl library, e.g. “-mute=jbcl.data” will mute all comming from jbcl.data.formats,jbcl.data.types, jbcl.data.dict and jbcl.data.basic. To switch all the messages, say: “-mute=jbcl” or simply “-mute” because the default behaviour is to mute everything. This option is executed AFTER -verbose, so user may increase verbosity level to a desired valueand then selectively switch off logging from some packages
-out.fname=<file name> provides an output file name
-stat.bin_width=<value> Provides the width of a histogram’s bin, by default set to 1.0. For multidimensional histograms provide multiple values separated by a comma.
-stat.normalize=<value> Normalizes a KDE estimator or a histrogram to a given value, by default to 1.0
-stat.percentiles=<values> provides values for percentiles definition; multiple values should be separated by a comma
-stat.quantiles=<values> provides values for quantile definition, e.g. for -stat.quantiles=0.2,0.8, 20 and 80 percentiles will be calculated; multiple values should be separated by a comma
-verbose=<integer> Sets up a verbosity level to a given value. The argument should be an integer from the rangefrom 0 (no messages at all, which is equivalent to -mute=jbcl) to 6 when everything is logged. See -mute for additional information.